Circular Topoplots

Setup

Package loading

using UnfoldMakie
using CairoMakie
using TopoPlots # for example data
using Random
using DataFrames

Data generation

Generate a Dataframe. We need to specify the Topoplot positions either via position, or via labels.

data, pos = TopoPlots.example_data();
dat = data[:, 240, 1]
df = DataFrame(
    :estimate => eachcol(Float64.(data[:, 100:40:300, 1])),
    :circular_variable => [0, 50, 80, 120, 180, 210],
    :time => 100:40:300,
)
df = flatten(df, :estimate);

Plot generations

Note how the plots are located at the angles of the circular_variable.

plot_circular_topoplots(
    df;
    positions = pos,
    axis = (; label = "Incoming saccade"),
    predictor = :circular_variable,
)

If the bounding variable is not between 0 and 360, since we are using time, we must specify it.

plot_circular_topoplots(
    df;
    positions = pos,
    axis = (; label = "Time?!"),
    predictor = :time,
    predictor_bounds = [80, 320],
)

Configurations of Circular EEG Plot

UnfoldMakie.plot_circular_topoplots — Function

plot_circular_topoplots!(f, data::DataFrame; kwargs...)
plot_circular_topoplots(data::DataFrame; kwargs...)

Plot a circular EEG topoplot.

Arguments

f::Union{GridPosition, GridLayout, Figure}
Figure, GridLayout, or GridPosition to draw the plot.
data::DataFrame
DataFrame with data keys (columns :y, :yhat, :estimate), and :position (columns :pos, :position, :positions).

Keyword argumets (kwargs)

predictor::Vector{Any} = :predictor
The circular predictor value, defines position of topoplot across the circle. Mapped around predictor_bounds.
predictor_bounds::Vector{Int64} = [0, 360]
The bounds of the predictor. Relevant for the axis labels.
positions::Vector{Point{2, Float32}} = nothing
Positions of the plot_topoplot.
center_label::String = ""
The text in the center of the cricle.
labels::Vector{String} = nothing
Labels for the plot_topoplot.

Shared plot configuration options

The shared plot options can be used as follows: type = (; key = value, ...)).
For example, plot_x(...; layout = (; show_legend = true, legend_position = :right)).
Multiple defaults will be cycled until match.

Placing ; is important!

figure = NamedTuple() - use kwargs... of Makie.Figure

axis = (xlabel = "", aspect = Makie.DataAspect(), label = "") - use kwargs... of Makie.Axis

layout = (show_legend = false, legend_position = :right, xlabelFromMapping = nothing, ylabelFromMapping = nothing, use_colorbar = true, hidespines = (), hidedecorations = Dict{Symbol, Bool}(:label => 0))

mapping = (x = nothing, y = (:estimate, :yhat, :y), positions = (:pos, :positions, :position, nothing), labels = (:labels, :label, :sensor, nothing))

visual = (colormap = Makie.Reverse{Symbol}(:RdBu), contours = (color = :white, linewidth = 2), label_scatter = true, label_text = true, bounding_geometry = GeometryBasics.Circle) - use kwargs... of Topoplot.eeg_topoplot

legend = (orientation = :vertical, tellwidth = true, tellheight = false) - use kwargs... of Makie.Legend

colorbar = (vertical = true, tellwidth = true, tellheight = false, flipaxis = true, labelrotation = -1.5707963267948966, label = "Voltage [µV]", colormap = Makie.Reverse{Symbol}(:RdBu)) - use kwargs... of Makie.Colorbar

Return Value: Figure displaying the Circular topoplot.

source

This page was generated using Literate.jl.